Sports anatomy is a crucial foundational subject for training professionals in physical education, sports medicine, and related fields. Establishing a teaching system that aligns with the Outcome-Based Education (OBE) philosophy and meets the FD-QM certification standards has become a central task in current educational reforms. This study focuses on the OBE-based FD-QM professional certification teaching reform in sports anatomy. Initially, the core competencies that graduates from the School of Sports and Health Sciences should possess were analyzed, and corresponding course graduation requirement indices were developed. Subsequently, the sports anatomy course content was integrated and optimized, leading to the design of a new modular and project-based teaching model. A professional teaching quality monitoring system based on FD-QM was established during the implementation phase. Quality management was ensured through syllabus reviews, tracking teaching activity quality, and evaluating learning outcomes to ensure the teaching process aligned closely with the expected goals. Modern teaching methods such as virtual simulation and online adaptive learning were incorporated into this teaching system, providing students with rich autonomous learning contexts.